PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA20G00038

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

DBB

Protein Properties

Length: 240aa MW: 26676.6 Da PI: 6.4191

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA20G00038	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	3.9e-06	5	33	6	34
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeH 34 C+ ++++e+ fC ++ lC++C + H AA20G00038 5 CDVCDKEEALVFCCADEAALCNNCDRHVH 33 *************************9988 PP
2	zf-B_box	29.3	1.8e-09	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++ C+ ++e ++ lfC++++ lC++C +H+ Ht AA20G00038 55 APLCDICKERRALLFCQEDRAILCRQCDIPIHQAndHT 92 789*****************************767776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.499	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.9E-8	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.59E-6	5	33	No hit	No description
PROSITE profile	PS50119	10.253	53	100	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	7.14E-5	53	91	No hit	No description
SMART	SM00336	2.1E-15	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-7	55	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.23E-8	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0080167	Biological Process	response to karrikin
GO:1900458	Biological Process	negative regulation of brassinosteroid mediated signaling pathway
GO:2000306	Biological Process	positive regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MKIWCDVCDK EEALVFCCAD EAALCNNCDR HVHFANKLAG KHLRFSLASP TFKDAPLCDI 60 CKERRALLFC QEDRAILCRQ CDIPIHQAND HTKSHNRFLL TGVKLSSSPP PYPKASDSIS 120 APALTRSNRP KTRPKSVSGE VPSSASNEIF NSSPSTTTSN CYYGFEETCH QISDSGSGSG 180 SGSISEYLME TLPGWRVEDL LDHPSCDGNN ISNNNNEFYS VYDGSSQYHH HGFWEQKPFS

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA20G00038

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446431.1	1e-133	PREDICTED: B-box zinc finger protein 20
Swissprot	Q0IGM7	1e-125	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	M4D2L0	1e-131	M4D2L0_BRARP; Uncharacterized protein
STRING	XP_010446431.1	1e-132	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6597	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	1e-122	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]