PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA20G00052

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

BBR-BPC

Protein Properties

Length: 302aa MW: 34101.7 Da PI: 9.3384

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA20G00052	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	330.9	3.5e-101	1	302	1	301
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnk 80 md++g++e r k+ yy+ ++++l +++++ms++aerda+++ern als kk+a+ +rd+a+ +rd a++ern+al+erd++ AA20G00052 1 MDSSGQYEngRYKPdYYKgaqsmwnmmpqhqikeQNNALV--MNKKIMSILAERDAAVKERNEALSVKKEALSARDEALEERDRAISERNNALMERDSA 97 9999999889**9999*****8877753335555..99*************************************************** PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179 + al ++e +l+ +lsg+k + + +ed ++e + + + ea+p+++ ++ea k+k+ +r+k++k + ++k+kk +e+ + +v+ AA20G00052 98 ISALHFRESNLN-------YILSGAKRSCHNDV----AVEDLSIE-ETQMIPEAFPLSTLPPEAAAPKRKQ-IKRKKVNK-QGQTKVKKVNEDLNLRVA 182 **999843.......45566666655555....55565555.3334467889999888877665544.44444444.345578888999999999 PP GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278 +++ ++ +++++s d++ln v++De+t+PvPvC+CtG+ +qCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL++La+eG++ AA20G00052 183 SPG--KKCRTDWDSNDVGLNSVTFDETTMPVPVCTCTGTAHQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGSVFSRLLSRLAGEGHE 279 999..57**************************************************************************************** PP GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301 l +pvDLkd+WA+HGtn+++ti+ AA20G00052 280 LTCPVDLKDYWARHGTNRYITIK 302 ********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.6E-148	1	302	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.6E-93	1	302	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDSSGQYENG RYKPDYYKGA QSMWNMMPQH QIKEQNNALV MNKKIMSILA ERDAAVKERN 60 EALSVKKEAL SARDEALEER DRAISERNNA LMERDSAISA LHFRESNLNY ILSGAKRSCH 120 NDVAVEDLSI EETQMIPEAF PLSTLPPEAA APKRKQIKRK KVNKQGQTKV KKVNEDLNLR 180 VASPGKKCRT DWDSNDVGLN SVTFDETTMP VPVCTCTGTA HQCYKWGNGG WQSSCCTTTL 240 SQYPLPQMPN KRHSRMGGRK MSGSVFSRLL SRLAGEGHEL TCPVDLKDYW ARHGTNRYIT 300 IK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA20G00052

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411681.1	1e-173	protein BASIC PENTACYSTEINE5
Refseq	XP_024005542.1	1e-173	protein BASIC PENTACYSTEINE5
Refseq	XP_024005543.1	1e-173	protein BASIC PENTACYSTEINE5
Refseq	XP_024005544.1	1e-173	protein BASIC PENTACYSTEINE5
Swissprot	Q8S8C6	1e-163	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	V4M9X7	1e-171	V4M9X7_EUTSA; Uncharacterized protein
STRING	XP_006411681.1	1e-172	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-160	basic pentacysteine 4