PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA20G00053

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 547aa MW: 61896.7 Da PI: 10.2107

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA20G00053	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.3	5.7e-07	401	455	8	62
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r NR +A rs +++ +++ Le+kv++L++e ++L + ++ e+ +l+ AA20G00053 401 KRIFDNRRSAARSKEKRTKYMFDLEQKVQTLQKEVTTLSAQCTAMEREMMNLTER 455 66678**********************************9999999888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-10	394	458	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.7E-10	395	448	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.082	396	459	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.79E-13	400	448	No hit	No description
SuperFamily	SSF57959	8.84E-9	400	453	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.4E-9	402	453	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MSDRTETMQR MCSSFGTSQT SIPQNLMNQN PQLNPNLIRP QFPQFSHPFS GFQAANGGVN 60 GAPPPYPITT PPYSQIPMNH QQNSQNFNHS RSISQPTSVF SLDSLPPLSP SPFQRSLPFP 120 ATSMAKNMAA RDVSMEVRDS INGLPPLSNS VFSRNAHRRS MSEVTNGLNP MIPQQIPYQR 180 SISGGQFTDW SKAAPLVKKE AEEQKKSEKE AIDELFSTFI NLDNIDVLNS SEANDNKNKE 240 TLNKKENRVN ESGNKKGSLK RRAINNGGDL EAMNTHYRSD SVDNSTTQKL SLNKEFPKPP 300 PSPRSLLRKT SSPMTSIDEN SDTSSLKVQK TEFTPLMANE EVTEMELFSP GKASPKTSIG 360 RKRRTVSLNT KKPEFTALEM RKIMANDRLS ELLKTDPPLV KRIFDNRRSA ARSKEKRTKY 420 MFDLEQKVQT LQKEVTTLSA QCTAMEREMM NLTERNRNLN YRIQSMKKQE QLQEALNDSL 480 AAEVNRLKLV VEGSYNRFGA GNDPNRSQMQ SLNPEMLLQE LNTGQFRYPQ MQFQNQNRPM 540 PQPDLNH

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MSDRTETMQR MCSSFGTSQT SIPQNLMNQN PQLNPNLIRP QFPQFSHPFS GFQAANGGVN  60
GAPPPYPITT PPYSQIPMNH QQNSQNFNHS RSISQPTSVF SLDSLPPLSP SPFQRSLPFP  120
ATSMAKNMAA RDVSMEVRDS INGLPPLSNS VFSRNAHRRS MSEVTNGLNP MIPQQIPYQR  180
SISGGQFTDW SKAAPLVKKE AEEQKKSEKE AIDELFSTFI NLDNIDVLNS SEANDNKNKE  240
TLNKKENRVN ESGNKKGSLK RRAINNGGDL EAMNTHYRSD SVDNSTTQKL SLNKEFPKPP  300
PSPRSLLRKT SSPMTSIDEN SDTSSLKVQK TEFTPLMANE EVTEMELFSP GKASPKTSIG  360
RKRRTVSLNT KKPEFTALEM RKIMANDRLS ELLKTDPPLV KRIFDNRRSA ARSKEKRTKY  420
MFDLEQKVQT LQKEVTTLSA QCTAMEREMM NLTERNRNLN YRIQSMKKQE QLQEALNDSL  480
AAEVNRLKLV VEGSYNRFGA GNDPNRSQMQ SLNPEMLLQE LNTGQFRYPQ MQFQNQNRPM  540
PQPDLNH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA20G00053

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	6e-71	bZIP family protein