PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA216G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 309aa    MW: 34242.2 Da    PI: 6.855
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA216G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18226259134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  AA216G00002 226 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 259
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-811305IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.714220256IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-15220270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-14224257IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-14224283No hitNo description
CDDcd002028.96E-15225282No hitNo description
PROSITE patternPS003440226251IPR000679Zinc finger, GATA-type
PfamPF003203.9E-16226259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MIGQSFGEDL DCGNFFDNMD DLIDFPGGDM DVDVGFGITD SDNFPNIWTT HDETTWPAPS  60
DPLFSSNSNS DQSPQELYVP FEDIVKVNLV EDSMIEKKED SFSTNTDSSS SHTQFRSSSP  120
VSVLESSSSS SQTTTSLVLS GKHGRPRTKR PRPAAQELKE SFSGGVDSRL IIRIPKQFLS  180
DHNKIIKKKK KNKKVKVITS SSSVSSEIEG NTDSYSSEQQ QPLRKCMHCE VTKTPQWRLG  240
PMGPKTLCNA CGVRYKSGRL FPEYRPAASP TFTPTIHSNS HKKVAEMRNK RCCNGENDLI  300
PNKACVGLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KRPRP
2185192IKKKKKNK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA216G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465287.11e-134PREDICTED: GATA transcription factor 8-like
RefseqXP_018465288.11e-134PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-128GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A3P6CU001e-131A0A3P6CU00_BRACM; GATA transcription factor
STRINGfgenesh2_kg.5__1883__AT3G54810.21e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-113GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]