PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA21G00006

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 394aa MW: 43962 Da PI: 6.3987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA21G00006	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.2e-09	207	254	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq AA21G00006 207 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 254 79**********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-14	201	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-9	201	258	No hit	No description
PROSITE profile	PS50888	14.634	203	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-14	203	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	207	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-8	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDLIEGFGGR SSGGPCREAA TGLESFHFSD EIRQLVTLPH DCTGSFTALL EMPGTQAMEL 60 LHLVADSSCS QGTVAKIGGD IAPTLHPFGT LTFPSDSALM ERAARFSVIA TEQNGNVSGE 120 TVSSLPSNSS NNLDRVKAEP AEIDSSQRMV SDQMVENQNP SKNYCYGKRK EREKKVKRSM 180 KKNKSSEEAD KLPYVHVRAR RGQATDNHSL AERARREKIN ARMKLLQELV PGCDKIQGTA 240 LVLDEIINHV QSLQRQVETT FDRVGATMSQ SCSYFQMLSM RLAAVNPRID FNLDSILASQ 300 NGSVIDGSFN ETAMQMAWQH HHVLENDESY HHHHHHHHHH EQLQQQWHFD GFHQPVWGRE 360 EDEEGSGNGH SLTLSETFLI GSATLQPNQV KMEL

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDLIEGFGGR SSGGPCREAA TGLESFHFSD EIRQLVTLPH DCTGSFTALL EMPGTQAMEL  60
LHLVADSSCS QGTVAKIGGD IAPTLHPFGT LTFPSDSALM ERAARFSVIA TEQNGNVSGE  120
TVSSLPSNSS NNLDRVKAEP AEIDSSQRMV SDQMVENQNP SKNYCYGKRK EREKKVKRSM  180
KKNKSSEEAD KLPYVHVRAR RGQATDNHSL AERARREKIN ARMKLLQELV PGCDKIQGTA  240
LVLDEIINHV QSLQRQVETT FDRVGATMSQ SCSYFQMLSM RLAAVNPRID FNLDSILASQ  300
NGSVIDGSFN ETAMQMAWQH HHVLENDESY HHHHHHHHHH EQLQQQWHFD GFHQPVWGRE  360
EDEEGSGNGH SLTLSETFLI GSATLQPNQV KMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA21G00006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176634	1e-101	AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBank	AY065411	1e-101	AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBank	AY096521	1e-101	AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850745.1	1e-165	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q3EAI1	1e-155	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A1J3CP64	1e-164	A0A1J3CP64_NOCCA; Transcription factor bHLH60
STRING	XP_006402839.1	1e-164	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-152	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]