PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00040
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 176aa    MW: 20234.6 Da    PI: 8.662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00040genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-055779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  AA21G00040 57 YTCSFCRREFKSAQALGGHMNVH 79
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-75483No hitNo description
Gene3DG3DSA:3.30.160.604.9E-45582IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1575784IPR007087Zinc finger, C2H2
PfamPF139121.2E-55780IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRTHLASFS KEDKTQEGER GEEEEEEEDF NGEIKNNIKN HYKNYEAGLI PWPPKNYTCS  60
FCRREFKSAQ ALGGHMNVHR RDRARLRQVP SWLFDPLHIP IPNPNPNSNP KPSSSSGQHL  120
RSKTTPYGGL VAREKRKSDV ETYELSGGDK KDEVLGFDAL RNPKQVLDLE LRLGYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135279229superman protein
2l1o_A5e-135279229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862495.11e-65zinc finger protein 11
RefseqXP_002879984.11e-65zinc finger protein 11
SwissprotQ9SLB84e-66ZFP11_ARATH; Zinc finger protein 11
TrEMBLD7LI583e-64D7LI58_ARALL; Predicted protein
STRINGAl_scaffold_0409_34e-65(Arabidopsis lyrata)
STRINGscaffold_403098.14e-65(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.14e-52zinc finger protein 11