PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00100
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 287aa    MW: 31180.3 Da    PI: 9.0608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00100genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11239284655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  AA21G00100 239 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 284
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-13236287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.72E-11237287No hitNo description
Gene3DG3DSA:4.10.280.102.4E-11238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-8239287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
YDSSAVPTRD FSSLGSQIHH PPLPPPPPPR QQHNPNAVGN YFSGESSSKD PGKSLYGFNN  60
EIEQDIIGAS SSPSLFRHRS SPAGFYDQHL PTDPNGRPKA GYAGGGGGGG GGERGPSRLK  120
SELRFSGGNN TSSGQEHHHS LPRIPEGEGG VNGVVSSSMS FGNNNHNNNW DNSSAHISFT  180
LDQPGKRSKT TDFFTLETQF SMPQTSLEIA RMENLMNIPD NAVSCRVRAK RGCATHPRSI  240
AERERRTRIS GKLKKLQELV PNMDKQTSYA DMLDLAVEHI KGLQHQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508466.11e-132PREDICTED: transcription factor bHLH129-like
SwissprotQ9ZW811e-112BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD91e-126R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010508466.11e-131(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.12e-91bHLH family protein