PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA21G00121

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 183aa MW: 21557.8 Da PI: 10.0727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA21G00121	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	4e-26	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eY++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r+ ra+tr gCka+++vk +++gkw +tk+++eHnH+l+ AA21G00121 12 FYDEYSRHIGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSMRKARASTREGCKAMIHVKFDRSGKWIITKFVKEHNHPLV 100 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-24	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEFESEDAAK LFYDEYSRHI GFVMRVMSCR RSEKDGRILA RRFGCNKEGH CVSIRGKFGS 60 MRKARASTRE GCKAMIHVKF DRSGKWIITK FVKEHNHPLV ISPREARQTL DEKDKRIQEL 120 TTELRNKKRL CAAYKEQLEA FVKIIEEYNH QITSKVENVV KNLKDFESID RELLQSKQDR 180 SLT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA21G00121

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508449.1	1e-113	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-20	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	D7LJZ7	1e-110	D7LJZ7_ARALL; Far-red impaired responsive family protein
STRING	XP_010508449.1	1e-112	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-114	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]