PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00239
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 151aa    MW: 17225.8 Da    PI: 10.3639
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00239genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.7e-1515541756
                HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                e F+++++++ +++  LAkkl+Lt rqV vWFqNrRa+ k
  AA21G00239 15 ETFKEHSTLNPKQKVGLAKKLNLTARQVEVWFQNRRARTK 54
                68************************************98 PP
2HD-ZIP_I/II108.54.9e-3515891691
  HD-ZIP_I/II 16 esFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                 e+F+e+++L+p++Kv la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
   AA21G00239 15 ETFKEHSTLNPKQKVGLAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVTELR-TL 89
                 68**********************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-7860IPR001356Homeobox domain
PfamPF000465.8E-131554IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-141554IPR009057Homeodomain-like
SuperFamilySSF466891.54E-131565IPR009057Homeodomain-like
CDDcd000862.00E-101557No hitNo description
PROSITE profilePS5007113.3451756IPR001356Homeobox domain
PROSITE patternPS0002703154IPR017970Homeobox, conserved site
PfamPF021831.6E-115689IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.5E-255699IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MTALTAEMDR GRNSETFKEH STLNPKQKVG LAKKLNLTAR QVEVWFQNRR ARTKLKQTEV  60
DCEYLKRCCD NLTEENRRLQ KEVTELRTLK LSPHLYMHMT PPTTLTMCPS CERVAVSSAG  120
NVNPTVRRLS PQRPGPGSPW TGISLEPRPA H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14856RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00239
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506430.14e-69PREDICTED: homeobox-leucine zipper protein ATHB-4-like
SwissprotP929532e-67ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLD7LBT75e-66D7LBT7_ARALL; Uncharacterized protein
TrEMBLR0FX195e-66R0FX19_9BRAS; Uncharacterized protein
STRINGXP_010506430.12e-68(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-69homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]