PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00304
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 445aa    MW: 49302.9 Da    PI: 9.4231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00304genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07121144226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k+  C+++   G Ck G++C+F H+
  AA21G00304 121 KEFVCKYWKS-GNCKKGEQCRFLHS 144
                 6668**8888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.6E-7117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7119144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868119146IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8119145IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5121144IPR000571Zinc finger, CCCH-type
SMARTSM003203.6E-6150189IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-47153440IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.58E-48153198IPR017986WD40-repeat-containing domain
CDDcd002001.11E-38154440No hitNo description
PfamPF004004.1E-5155189IPR001680WD40 repeat
PROSITE profilePS5008214.719157198IPR001680WD40 repeat
PROSITE profilePS5029421.146157360IPR017986WD40-repeat-containing domain
PRINTSPR003203.2E-8176190IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780176190IPR019775WD40 repeat, conserved site
SMARTSM0032014229266IPR001680WD40 repeat
SuperFamilySSF509784.58E-48236442IPR017986WD40-repeat-containing domain
SMARTSM003207.2E-6274311IPR001680WD40 repeat
PfamPF004001.8E-4276311IPR001680WD40 repeat
PROSITE profilePS5008211.879281320IPR001680WD40 repeat
PRINTSPR003203.2E-8298312IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780298312IPR019775WD40 repeat, conserved site
SMARTSM003202.3E-4314351IPR001680WD40 repeat
PfamPF004000.0021316350IPR001680WD40 repeat
PROSITE profilePS500829.005321350IPR001680WD40 repeat
PRINTSPR003203.2E-8338352IPR020472G-protein beta WD-40 repeat
SMARTSM00320170358399IPR001680WD40 repeat
SMARTSM003200.68402439IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MYSMSLKAPR RYSQGRNFGV TREQDTTAYI APRRTYAPYE NRPKNGQYKG SKNMVWTSKE  60
YRSSDANKSR KSDAYVSKNS AVSGTKCNMP NKLKKNVEPS ISSIIGTRSR RLQDNDNPKS  120
KEFVCKYWKS GNCKKGEQCR FLHSWCCLPG LVAVAELEGH KKEIKGIALP QGSDKLFTAS  180
SDGTVRIWDC KTGQCVHINN LQGEAGSLIS EGSWAFLGLQ NEVKAFNVQT NKEVHLSGPV  240
GQVHAMTVGK DMLFAGTSSG NISVWRATET ESEPFKYVTS LEGHTGEVVC FVVGGQQLYS  300
GSKDKTIKVW DLNTLQCRAT LRQHNDTVTS LLCWDQFLLS SSLDGTIKVW GCSEDGNNLK  360
LVKSRRQEQS VHLLCGLHDA DAKPIIFCSH QNGTVTIYDL PSFEERGKMF STNMVGALTF  420
GPNGLVFTGD KSGKLRVWNL AGDKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6o_A8e-201544408322Ika8
6g6o_B8e-201544408322Ika8
6g6o_C8e-201544408322Ika8
6g6p_A8e-201544408322Ika8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405507.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGA0A087H5G00.0(Arabis alpina)
STRINGBostr.18994s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein