PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00548
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family DBB
Protein Properties Length: 202aa    MW: 21762.2 Da    PI: 5.0286
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00548genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07941335
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                 + C+ +++  + l+C+ ++  lC  C  e H+
  AA21G00548  9 SQSCDYCNSSVALLYCKADSAKLCLACDKEVHS 41
                578***************************995 PP
2zf-B_box19.81.7e-065385436
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                  C+ +++ +++ fC + ++llC++C  e H +
  AA21G00548 53 FLCDSCHDSPASVFCDTKRSLLCQNCDWERHTS 85
                57***************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.968754IPR000315B-box-type zinc finger
SMARTSM003369.0E-14754IPR000315B-box-type zinc finger
PfamPF006431.7E-51049IPR000315B-box-type zinc finger
CDDcd000218.55E-61254No hitNo description
PROSITE profilePS501199.04450105IPR000315B-box-type zinc finger
CDDcd000212.87E-65384No hitNo description
SMARTSM003361.355105IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEKGEEESSQ SCDYCNSSVA LLYCKADSAK LCLACDKEVH SANQLFAKHF RSFLCDSCHD  60
SPASVFCDTK RSLLCQNCDW ERHTSSSRCG GATGSSNSLH SRRPVEGFSG CPSVTEFLAI  120
VGLDDLSDKS LFLNDGERFT GVGRGGGGGG SSELLIWETP EIVSLNDLIA SGGSGHNFRA  180
MDIPSLPKAS SFFFSSYCFL FN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552787.13e-82PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822562e-73COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A087H5Y82e-81A0A087H5Y8_ARAAL; Uncharacterized protein
STRINGA0A087H5Y84e-82(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.28e-76B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]