PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA221G00010
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 324aa    MW: 35888.6 Da    PI: 5.4928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA221G00010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-1555104255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L +++eY+++Lq
  AA221G00010  55 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKKDTASFLLEVIEYVQYLQ 104
                  899*************************9....688888**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-1751124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-2152124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.04453103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1255104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-1355108No hitNo description
SMARTSM003531.3E-1159109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRTGKGNQEE EEYGEEDYAS KREGPSSSII VHSNNNSNTA VSRDARENDK ASAIRSKHSV  60
TEQRRRSKIN ERFQILRELI PNSEQKKDTA SFLLEVIEYV QYLQEKVQKC EGSYPGWSPE  120
PTKLMPWRNN HWRVQSLTNH PLAIANGSGP GIPFPGKFEE NTVTSTAGIG AEMQKPTVSD  180
QGRAIACKSI DSRTELDEKR LPPVQLIPPL IQAAQSNESP ATRDEIGQNN DLVIEGGTIS  240
ISSDYSHELL SSLTQALQNA GIDLSNARLS VQIDLGKRAN QGLSHDASSN KNPLPSDIQG  300
TTQPREEACV EEESEHSDKR MKTK
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA221G00010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391065.11e-178transcription factor BIM2 isoform X2
SwissprotQ9CAA41e-167BIM2_ARATH; Transcription factor BIM2
TrEMBLE4MVZ21e-177E4MVZ2_EUTHA; mRNA, clone: RTFL01-03-H22
TrEMBLV4MAX51e-177V4MAX5_EUTSA; Uncharacterized protein
STRINGXP_006391066.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-149BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]