PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA23G00014

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

ERF

Protein Properties

Length: 218aa MW: 24481.2 Da PI: 9.3496

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA23G00014	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.7	1.2e-17	77	127	3	56
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+++AeIrd + k r++lg+f t eeAa a+++a+ +l+ge AA23G00014 77 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFNTSEEAALAYDQAAFALKGE 127 9*****.******32..2.24***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	5.5E-35	76	140	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-13	76	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.563	76	134	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-29	76	134	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-22	77	136	IPR016177	DNA-binding domain
CDD	cd00018	2.52E-28	77	133	No hit	No description
PRINTS	PR00367	1.6E-10	77	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	100	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MESQTSFFSQ DFSQDNSSLS SWSSQESWED TFFAFTSSTH YSNDFFTSSS SSPSSSSPSS 60 SSSSSTSEAM MIKERSYRGV RKRPWGKYAA EIRDSTRKGI RVWLGTFNTS EEAALAYDQA 120 AFALKGERAV LNFSVEMVME SLKKMENVNF EDGGSPVMAL KRKHSLRKKV RGKKRFSTFS 180 KNSRSVLMNQ ESKRTEAGVM VFEDLGAEYL EQLLSSCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-26	77	141	15	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA23G00014

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118552.1	6e-77	PREDICTED: ethylene-responsive transcription factor ERF094-like
Swissprot	Q8VYM0	1e-65	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A3N6QIG8	2e-76	A0A3N6QIG8_BRACR; Uncharacterized protein
STRING	Bra032433.1-P	2e-76	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3990	18	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	1e-54	ethylene-responsive element binding factor 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]