PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA23G00016
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 433aa    MW: 49246.2 Da    PI: 6.1052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA23G00016genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10219260854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  Er RR + +++f eL+el+P++     +K + a+i+ +A+++Ik+L
  AA23G00016 219 TERERRVHFKDRFGELKELIPNP-----TKSDRASIVGEAIDHIKEL 260
                 6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.99E-9209265No hitNo description
SuperFamilySSF474591.09E-11210276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9210268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.227211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7219260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MYEELGYFEP QAPAEMTAES NFSNAEKPPP IVVNGSTSNS NCSLEELSEF HLSPQDCSLA  60
TATVHQLQIS PNPPDNQFQS NNIHLIHHDP SLSVHNLPSY APQSTNWDSG YPDFVNLDPN  120
PKTPDLLSLL QLPRSSLPPS ISNLQDIITS SYDPLFHLNF PMQQSTQVNQ HGGLLDLDAQ  180
IDANEGMNMM YTEEDNHGIF NTGLNRKGRG SRKRKVFPTE RERRVHFKDR FGELKELIPN  240
PTKSDRASIV GEAIDHIKEL LRTIEECKLL LERKRVMKQR NKRGRFMEAA SEEEDIDENY  300
KAQNETEQCL MNKNNSLRCS WLRRKSKYTE VDVRIIDDEV TIKLVQKKKI NCLLFVSKVI  360
DKLQLDLQHV AGAQIGEHHS FLFNSKISEG SCVYASGIAD TVMEVVEKQY INDHHHHLVP  420
INNGGGYNNG YHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA23G00016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584762.10.0PREDICTED: transcription factor bHLH89
RefseqXP_013696065.10.0transcription factor bHLH89
SwissprotQ9LND01e-180BH089_ARATH; Transcription factor bHLH89
TrEMBLA0A078F9Z00.0A0A078F9Z0_BRANA; BnaC05g04240D protein
TrEMBLA0A0D3C8130.0A0A0D3C813_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EBF70.0A0A3P6EBF7_BRAOL; Uncharacterized protein
STRINGBo5g007310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-155bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]