PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA23G00087

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 316aa MW: 35076.9 Da PI: 6.1068

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA23G00087	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	142	195	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ AA23G00087 142 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNG 195 9*****************************************999888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-15	138	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	140	203	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-10	142	196	No hit	No description
SuperFamily	SSF57959	1.76E-10	142	193	No hit	No description
Pfam	PF00170	7.3E-9	142	198	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.63E-23	143	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MENSDPPSNP VDSRPDPNPN HSPMPSTFHR RSRSDDMSMF MFMDPLSGAP PSSDDLPSDD 60 DLFSAFIDVD SLSSNPNLPF SFPNSSTGNS VPPPSSSATS RPRHRHSNSV DAGCAMYAGE 120 IMDAKKAMPP EKLAELWNID PKRAKRILAN RQSAARSKER KARYIQELER KVQSLQTEAT 180 TLSAQLTLYQ RDTNGLATEN TELKLRLQAM EQQAHLRNAL NEALRKEVER MKMETGEISN 240 HSDSFDLGMQ QRFMPIPPYH GFNQNQPIQM SNSQSVSDFI QNGRMQGLEI SSHSNSSTLV 300 KSEGPSLSAS ESSSGY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00129	DAP	Transfer from AT1G06850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA23G00087

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419852	1e-144	AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AY062474	1e-144	AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBank	BT000102	1e-144	BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432665.1	1e-154	PREDICTED: transcription factor RF2b
Swissprot	Q6S4P4	4e-79	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A397YQV1	1e-152	A0A397YQV1_BRACM; Uncharacterized protein
STRING	Bra030663.1-P	1e-149	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13555	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-121	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]