PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA24G00041
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14371.4 Da    PI: 10.1618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA24G00041genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.72.9e-131866550
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50
                 k +r+v fskRr g++KK  ELS L + +vav   s++   + +++y+
  AA24G00041 18 TKEQRSVAFSKRRVGVFKKSAELSLLSGCRVAVFANSPSansDSIHTYA 66
                5789*****************************9988751115566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-12668IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.395656IPR002100Transcription factor, MADS-box
CDDcd002662.19E-16780No hitNo description
PRINTSPR004041.0E-6828IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-15885IPR002100Transcription factor, MADS-box
PfamPF003198.6E-121956IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-62843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSKSTKTKTK IPIQKRDTKE QRSVAFSKRR VGVFKKSAEL SLLSGCRVAV FANSPSANSD  60
SIHTYASNST ALEIAQCYLN GTVPPKLGFW WEDSKLDHCE DPATLQSMID RLEKNKKDAL  120
AAFENKKGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA24G00041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487931.23e-33PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019084259.19e-34PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_019096884.13e-33PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096885.13e-33PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096886.13e-33PREDICTED: uncharacterized protein LOC104765850 isoform X1
TrEMBLC0SVQ91e-31C0SVQ9_ARATH; Uncharacterized protein At5g27130 (Fragment)
TrEMBLF4K2U31e-31F4K2U3_ARATH; AGAMOUS-like 39
TrEMBLO046571e-31O04657_ARATH; A_TM021B04.16 protein
STRINGXP_010487927.11e-32(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.12e-34AGAMOUS-like 39