PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA25G00054

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 257aa MW: 30501.9 Da PI: 4.7423

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA25G00054	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.2	2.6e-26	134	184	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++s e++s+yF++pi+ AAkeL+++lT+LK++CR++GI+RWPhRk+ sl AA25G00054 134 KTNLSKETISNYFYMPITRAAKELNIGLTLLKKRCRELGIQRWPHRKLMSL 184 679*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.654	109	205	IPR003035	RWP-RK domain
Pfam	PF02042	9.6E-22	136	184	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MNPYKEWQDW FSSEENFGFD FNFNFDTIKP LSSSFFTDYL SFPDLESISS FSQDVLSGSQ 60 GSESWIETID QNNKNETYNI GDSSNPEKTK KRRSHHQESE EQDQEQEQEQ EQYQQEQESE 120 IDENHEMINW GSTKTNLSKE TISNYFYMPI TRAAKELNIG LTLLKKRCRE LGIQRWPHRK 180 LMSLQTLIKN VKELEMAEGE EVNGRNLRSA LEILEMEKKM IEELPDLEFE DKTKRLRQAC 240 FKANYKRRRL MIISSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRRSH
2	245	249	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA25G00054

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480535.1	3e-62	PREDICTED: protein RKD1
Swissprot	Q9CA66	5e-58	RKD2_ARATH; Protein RKD2
STRING	XP_010480535.1	1e-61	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-52	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]