PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA260G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRF
Protein Properties Length: 255aa    MW: 29119.7 Da    PI: 8.1637
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA260G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC68.49e-2269111143
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH hrg++r rk  
  AA260G00003  69 DTEPGRCRRTDGKKWRCSKEAYPDSKYCERHRHRGKNRPRKLS 111
                  689***********************************99975 PP
2QLQ56.86.6e-20641237
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                  FTa+Q+++L++Q+l++ yL+a++P+Pp+Ll+ i+k
  AA260G00003  6 LFTASQWEELEHQALIFNYLVAGLPIPPHLLFLITK 41
                 5******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-9541IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.84641IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-15739IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.45569113IPR014977WRC domain
PfamPF088791.0E-1771110IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MASTRLFTAS QWEELEHQAL IFNYLVAGLP IPPHLLFLIT KPFLSSPSTF FSPHFSWNMY  60
EMGLGRKIDT EPGRCRRTDG KKWRCSKEAY PDSKYCERHR HRGKNRPRKL SPSPSPSPSP  120
HHISLHASDL SIDFRGRRRG RNGYMDDFLS MESCGSNKSC SSLIMEEDDA SWGYKSLTLN  180
SRVSSQFKKQ RDNNNGCCEG ERQGHCFILG TDVGKCETPL KLEEEEEGEE GKKSFHRFLE  240
EWPSSNSSVS TSLSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA260G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887234.12e-78growth-regulating factor 6 isoform X2
SwissprotQ9ZQ121e-74GRF6_ARATH; Growth-regulating factor 6
TrEMBLD7LA612e-76D7LA61_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2919__AT2G06200.13e-77(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-59growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]