PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00019
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 227aa    MW: 25917.2 Da    PI: 9.8447
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.24.1e-33128752128
         NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + + kewyf+s++d+kyatg+r+nrat sgyWkatgkd+ +++ kg++vg++ktLvfy+grapkg+ktdWvmhe+rl
  AA26G00019  12 EVGGKEWYFYSQKDRKYATGQRTNRATGSGYWKATGKDRGIYR-KGRVVGMRKTLVFYQGRAPKGRKTDWVMHEFRL 87 
                 44779**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.4461104IPR003441NAC domain
PfamPF023654.8E-15787IPR003441NAC domain
SuperFamilySSF1019411.96E-3813104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNGKKNKVMD AEVGGKEWYF YSQKDRKYAT GQRTNRATGS GYWKATGKDR GIYRKGRVVG  60
MRKTLVFYQG RAPKGRKTDW VMHEFRLQHS PLKEEWVLCR VFHKKSDREN MIRSCSDETQ  120
SATLTPFIKF DQQLASNFPS DDHGDMMRNQ QVQVQVQVPC FSFLPQNQTN LSAPLFTGTA  180
SSDQMVLRAL LSQLTNSAKE SESCGEGSSE THLTDNNIAI PPTLWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-331110669170NAC domain-containing protein 19
3swm_B5e-331110669170NAC domain-containing protein 19
3swm_C5e-331110669170NAC domain-containing protein 19
3swm_D5e-331110669170NAC domain-containing protein 19
3swp_A5e-331110669170NAC domain-containing protein 19
3swp_B5e-331110669170NAC domain-containing protein 19
3swp_C5e-331110669170NAC domain-containing protein 19
3swp_D5e-331110669170NAC domain-containing protein 19
3ulx_A4e-331110964173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00019
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407275.11e-85NAC domain-containing protein 21/22
SwissprotQ84TE63e-82NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1J3DZ542e-91A0A1J3DZ54_NOCCA; NAC domain-containing protein 21/22
STRINGXP_006407275.15e-85(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.12e-76NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]