PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00337
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 387aa    MW: 41991.5 Da    PI: 7.179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00337genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-13140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
       AA26G00337 140 PWTEEEHRLFLIGLQKLGKGDWRGISRSYVTSRTPTQVASHAQKY 184
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.127133189IPR017930Myb domain
SuperFamilySSF466894.86E-16136189IPR009057Homeodomain-like
SMARTSM007171.2E-8137187IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.3E-17138187IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-10139183IPR009057Homeodomain-like
PfamPF002493.1E-10140184IPR001005SANT/Myb domain
CDDcd001671.82E-8140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGSCGGGI GGSTPSAVKL FGVRLTDGSI IKKSASMGNL  60
SALAAAAAAV HHRLSPSSPL ATSNHDSPLS DHVQQHNEGY LSDDPGHGSG SIHRRVERKR  120
GKEISSNLSN FLDFESTGVP WTEEEHRLFL IGLQKLGKGD WRGISRSYVT SRTPTQVASH  180
AQKYFIRHSH SSRRKRRSSL FDMVTDDMVT DSSPVQEDHT SPHSQPENTN TTLPSLELSL  240
NTTDCETVMA SSPQEKTKEP EESIETSNGL SPILIPSFFP PCFPVTYTFW LPATTTSTSF  300
PGTEHTLEPS QSQHQVLKPT PGFAKERVNM DELVSMSQLS IEVEARHETE PSPLSLKLEP  360
SRPSAFHSNG AVNGSDLSKG NNAIQAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297882.11e-174transcription factor MYBS3
TrEMBLA0A087HA391e-174A0A087HA39_ARAAL; Uncharacterized protein
TrEMBLO043221e-174O04322_ARATH; Myb-related transcription activator (MybSt1) isolog
STRINGA0A087HA391e-175(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-167MYB_related family protein