PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00381
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 186aa    MW: 19876.4 Da    PI: 10.1557
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00381genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.2e-184680135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  AA26G00381 46 CVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQ 80
                *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.44095IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-124082No hitNo description
SMARTSM004014.1E-114096IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.3E-154480IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.65E-1045100No hitNo description
PROSITE patternPS0034404671IPR000679Zinc finger, GATA-type
PfamPF003205.3E-164680IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSESEETKRN LDSAEEVSDV DNENCSSSGS GGGSGSASGG ETKKTCVDCG TSRTPLWRGG  60
PAGPKSLCNA CGIKSRKKRQ AAQGIKPEEK KKTKRSNSSN DLNLEHRSPK NTINKTDLKP  120
KSCSNNTTKS SCSNGNKGVS KFLDLGFKVP VMKRSAVEKK RLWKKLGEEE RAAVLLMALS  180
CGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291782e-39AK229178.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-46-O07.
GenBankAP0013082e-39AP001308.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUH15.
GenBankBT0108442e-39BT010844.1 Arabidopsis thaliana At3g16870 mRNA, complete cds.
GenBankBT0126112e-39BT012611.1 Arabidopsis thaliana At1g35180 gene, complete cds.
GenBankCP0026862e-39CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188312.11e-77GATA transcription factor 17
SwissprotQ9LIB51e-78GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A384L5443e-76A0A384L544_ARATH; GATA17
TrEMBLQ0WPA13e-76Q0WPA1_ARATH; Uncharacterized protein At3g16870
STRINGBostr.28625s0006.1.p2e-78(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.15e-77GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]