PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00528
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 393aa    MW: 45724.7 Da    PI: 7.5273
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.85.6e-401523163136
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec..eaesssssasnsssg........ 88 
                  ++d+hski T++g RdRR+Rls+++a ++F Lqd+LGfdk+skt+eWLl+qakp+i++++ +   +    s+c  +  +++s++ +++ +        
  AA26G00528 152 NRTDKHSKIKTAKGTRDRRMRLSLDVATKLFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATSlqlNHGEGSDCftS--DDESQKRSKGTSlceiasfl 248
                 589************************************************************77744444777532..22222222222244566666 PP

         TCP  89 ....................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                     + ++   k+k+ q +++   +l+ke+rakar+ra++rt+ekm++k ++
  AA26G00528 249 teehgdnsinttdlncidkiDGRSIRGKRKSLQPRTSILKKLSKEERAKARERAKDRTKEKMMLKRRS 316
                 666777788899999**9985555555677777777778***********************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.927153211IPR017887Transcription factor TCP subgroup
PfamPF036343.2E-40153311IPR005333Transcription factor, TCP
PROSITE profilePS5137010.085292309IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MNYNTFNSTT TNFNSTNNIE DYINMLFPYN HHSSLSFNPS SIIPNHHHHN HLDHHHHLDH  60
HHHHNHLDHH HHHQQLLQPS QFEFDSDLAL FTSLLPQNNI GQEDDVFPLN NNFIEEQSLD  120
QASETITHIE DSQRISISQD PKMKKLNNNK RNRTDKHSKI KTAKGTRDRR MRLSLDVATK  180
LFGLQDMLGF DKASKTVEWL LTQAKPEIIK IATSLQLNHG EGSDCFTSDD ESQKRSKGTS  240
LCEIASFLTE EHGDNSINTT DLNCIDKIDG RSIRGKRKSL QPRTSILKKL SKEERAKARE  300
RAKDRTKEKM MLKRRSQVNV LEQFHDLKNN KSNLNSNWNK EIQESYYKND RFAICEEIEM  360
NQDHHRVSDE SYDLINRLNS SFCHRSQGAA TSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00528
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001118656.11e-112TCP family transcription factor
SwissprotA1YKT11e-111TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A178VH081e-109A0A178VH08_ARATH; TCP18
STRINGBostr.19424s0807.1.p1e-112(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-83TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]