PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00601

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 455aa MW: 50529.2 Da PI: 10.0859

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00601	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.5	1.2e-12	377	433	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk.evaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + el + + +lk AA26G00601 377 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAELMEsQKNELK 433 79***************************************7665555540444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-12	373	437	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	375	427	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-13	377	428	No hit	No description
CDD	cd14707	2.34E-25	377	429	No hit	No description
Pfam	PF00170	1.7E-10	377	433	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-10	377	426	No hit	No description
PROSITE pattern	PS00036	0	380	395	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MHCFTEEEKE HPRNMGTNIN FNNLSGDTSG GNQMKPSTGS VYPLARQSSV YSLTFDELQN 60 TLGVSGKEFG SMNMDELLKS IWTAEETQAM TSLAAVAQPS GANATTGGNL QRQGSLTLPR 120 TISQKTVDEV WKDLMNKESN VNIGSSCGGE PSAPPRQQTL GEMTLEEFLF RTGVVREEQN 180 NNGFYGSNGG GLSFGFGQPN QNSISFSGNN ESMVLNQSPG LGLKVGGTQQ HQQQKEMQQQ 240 QQPQQLVQQR QRQVLQQPHQ QLLQQPRQQQ LLQQPRQQLQ EPQSQQYPQQ RLPQTIFPKQ 300 ANVAFASPAN VVNKSFAGVA NNSLNNSTGF ANYGTGVTVA VTSPGTSSAD NNSLSPVPYV 360 FGRGRRSNAG MEKVVERRQR RMIKNRESAA RSRARKQAYT LELEAEIEKL KKVNQELQRK 420 QAELMESQKN ELKESSKHPW GNKRQCLRRT LTGPW

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MHCFTEEEKE HPRNMGTNIN FNNLSGDTSG GNQMKPSTGS VYPLARQSSV YSLTFDELQN  60
TLGVSGKEFG SMNMDELLKS IWTAEETQAM TSLAAVAQPS GANATTGGNL QRQGSLTLPR  120
TISQKTVDEV WKDLMNKESN VNIGSSCGGE PSAPPRQQTL GEMTLEEFLF RTGVVREEQN  180
NNGFYGSNGG GLSFGFGQPN QNSISFSGNN ESMVLNQSPG LGLKVGGTQQ HQQQKEMQQQ  240
QQPQQLVQQR QRQVLQQPHQ QLLQQPRQQQ LLQQPRQQLQ EPQSQQYPQQ RLPQTIFPKQ  300
ANVAFASPAN VVNKSFAGVA NNSLNNSTGF ANYGTGVTVA VTSPGTSSAD NNSLSPVPYV  360
FGRGRRSNAG MEKVVERRQR RMIKNRESAA RSRARKQAYT LELEAEIEKL KKVNQELQRK  420
QAELMESQKN ELKESSKHPW GNKRQCLRRT LTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00601

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641143.1	1e-177	ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Swissprot	Q9M7Q2	1e-175	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	D7L9X6	1e-179	D7L9X6_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__2145__AT3G19290.1	1e-180	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	5e-78	ABRE binding factor 4

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]