PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00655

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 310aa MW: 34713.2 Da PI: 9.007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00655	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.8e-09	23	71	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l ++ +K++Ka+iL+ +v+ +k+L AA26G00655 23 KSQKAGREKLRREKLNEHFLELGNVLDPD----RPKNDKATILTDTVQLLKEL 71 5566779****************9997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.268	21	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-12	21	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	21	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.23E-7	22	75	No hit	No description
Pfam	PF00010	1.0E-6	23	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-6	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGVKRIKGSV FAEGEVMDIS ARKSQKAGRE KLRREKLNEH FLELGNVLDP DRPKNDKATI 60 LTDTVQLLKE LTSEVTKLKS EYIALTDESR EVHIYPFLSK LTQEKNDLRE EKTSLKSDIE 120 NLNLQYQQRL RAMSPWGAAM DHTVMMAPPP SFPYPMPMAM PPGSIPMHPS MPSFTYYGNQ 180 NPSMIQAPCP TYMPYIPPNT IVEQHSVHIP QNPQTGNRSR EPRTKLSRES RAEKAEDSNE 240 VATQLELKTP GSTSDKDTLQ KPEKSKRCKR NSNNSIEESS HSSKCSSSPS VRDNSSSSSV 300 AGGPKPDDAK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001326099.1	1e-165	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9LT23	1e-164	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1I9LN90	1e-163	A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	AT3G19860.2	1e-163	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	1e-153	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]