PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00745
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 326aa    MW: 36010.3 Da    PI: 8.1499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00745genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12257301755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +Er RR +i +++ +L++l+P+     ++  + a++Le Av+YIk+Lq
  AA26G00745 257 VAERVRRTKISERMKKLQDLVPNM----DTQTNTADMLESAVQYIKDLQ 301
                 78*********************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16253317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-11254305No hitNo description
Gene3DG3DSA:4.10.280.105.9E-16255311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10257301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MESYSPQHFH LHQKHQTNSG LTRYQSAPSS YFSTFVNKES IEEFLDRPTS PETEKILSGI  60
LQTTETSKNI DSFLHHSFSR KNNSEENSSS EINVKPLEVK TEEVKTEFEE TALCPGESIG  120
YDSVSKSLNQ KKRQRNNGDL SQTTSLARHN SSPAGLFSSI DVETACAAVM KSMGDIGAVN  180
VMKTNNTEAI PVTPQSKSGF SSRLPPRTLS GSASGRPPLA HHVSLPKSLS DIEEMLSDSI  240
PCKIRAKRGC ATHPRSVAER VRRTKISERM KKLQDLVPNM DTQTNTADML ESAVQYIKDL  300
QEQVKILEEK RGRCSCRPPG PAESGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869674.11e-139transcription factor bHLH122
SwissprotQ9C6901e-135BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A1J3H6A21e-139A0A1J3H6A2_NOCCA; Uncharacterized protein
STRINGfgenesh2_kg.1__4183__AT1G51140.11e-138(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-132bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]