PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA273G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 162aa    MW: 18546.8 Da    PI: 8.8037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA273G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-14755555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 h e+E++RR+++ s ++ Lr+llP  +   ++K s ++ + +Av+YIk+++
  AA273G00003  7 HREIEKQRRQEMSSLYASLRSLLPLEF--IQGKRSTSDQVNEAVNYIKYME 55
                 99***********************65..*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.256254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-13573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-9759No hitNo description
PfamPF000104.2E-11755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-11768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEKILVHREI EKQRRQEMSS LYASLRSLLP LEFIQGKRST SDQVNEAVNY IKYMEKKNKH  60
MNLKRDELIL KYGVSVENLN HVVVVVRPCL VGVEIVFSVL RTRLSSVLEV IKEHGLCVVS  120
CISSNVNNRV IYTIQAEVND LAFVDLGYLK DTLTLMVLNG LL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA273G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873857.15e-68LOW QUALITY PROTEIN: transcription factor bHLH118
SwissprotQ9STJ72e-65BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A1J3DAL83e-69A0A1J3DAL8_NOCCA; Uncharacterized protein (Fragment)
TrEMBLA0A1J3G3E43e-69A0A1J3G3E4_NOCCA; Uncharacterized protein
TrEMBLA0A1J3IUJ13e-69A0A1J3IUJ1_NOCCA; Uncharacterized protein
STRINGXP_010448440.17e-67(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.11e-56bHLH family protein