PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA277G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 121aa    MW: 13831.8 Da    PI: 8.9969
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA277G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-1426981594
                 -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                  l++pk f ++  ++ k+e  +l+   +  ++W+vk+  ++k+    lt+GWk+F  +++L + D +vF+++g+  f  +v
  AA277G00001 26 HLSIPKIFYAALvEERKKEYAELRTDASADKVWKVKM--EGKK----LTQGWKKFSLDHNLGVDDLLVFRHEGNLVF--NV 98
                 389*****9999966677788999999999*******..9999....***********************8776444..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-189106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-1712106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.92612104IPR003340B3 DNA binding domain
CDDcd100172.73E-1113101No hitNo description
SMARTSM010191.5E-1315104IPR003340B3 DNA binding domain
PfamPF023624.9E-102695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MATSSSSSIS VNRYFIKPFL PGYYTHLSIP KIFYAALVEE RKKEYAELRT DASADKVWKV  60
KMEGKKLTQG WKKFSLDHNL GVDDLLVFRH EGNLVFNVLM FGPSGCEITF SNENNMETRG  120
N
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA277G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489775.16e-32PREDICTED: B3 domain-containing protein REM7-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.17e-34B3 family protein