PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA277G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 156aa    MW: 17950.2 Da    PI: 6.6842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA277G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-141599196
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 ffk l     + s+ +++p +f ++  ++ k++   + l++ +s r Wevkl  ++++    lt+GW+eF  a+ L++gD++vFk++g+  f  +v +
  AA277G00003 15 FFKPL--LPGFYSH-IRIPDSFYSALvEETKRGY--VELRSdTSDRLWEVKL--EGQD----LTEGWEEFSLAHSLRVGDILVFKHEGNLVF--HVLM 99
                 56666..5566666.99******99976555565..555554999*******..8888....***********************8775555..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-206105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-1912108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.53412103IPR003340B3 DNA binding domain
CDDcd100172.16E-1613100No hitNo description
SMARTSM010193.8E-2015103IPR003340B3 DNA binding domain
PfamPF023625.5E-102597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MATPSSSSRS VNRHFFKPLL PGFYSHIRIP DSFYSALVEE TKRGYVELRS DTSDRLWEVK  60
LEGQDLTEGW EEFSLAHSLR VGDILVFKHE GNLVFHVLMF GSSFCEITFS PYLPENVNNV  120
NDGAKKGKRV KTEVGNSLSE NENNVEERVV KQFYRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA277G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624170.17e-37PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A0D3BAN32e-35A0A0D3BAN3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AKW62e-35A0A3P6AKW6_BRAOL; Uncharacterized protein
STRINGBo3g063950.13e-36(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-37B3 family protein