PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA290G00005
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 779aa    MW: 86965.3 Da    PI: 5.3939
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA290G00005genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-1757116156
                  TT--SS--HHHHHHHHHH....HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeel....FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t+ q++e+e++    F++n++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  AA290G00005  57 KKRYHRHTSRQIHEMEAYvlplFNENPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 116
                  688899**********965555***********************************998 PP
2START141.11.1e-442745032206
                  HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                  la ++ +el k+  ++ep+W + +  +  +++ +l ++e +k            ++ e++ra +vv+m++ +lv  +l+   +W+e++     +a+t+
  AA290G00005 274 LAVSCVEELTKMCNVDEPLWNLKRcdKTGDETLCLNEEEYKKLfpwlmeankggFRREVSRANAVVIMNSITLVDAFLNAD-KWSEMFCsivaRAKTV 370
                  788999******************6544455555666655555999999*99999**************************.******99999***** PP

                  EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
        START  83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehv 170
                  + issg     g l lm+ elq+lsplvp R+ +f+Ry +q  ++g+w+ivd  +ds  ++ +   ++++    + pSg+li++++ng+s+v wveh+
  AA290G00005 371 QIISSGvsgasGSLLLMYGELQVLSPLVPtREAYFLRYVEQnIEQGTWAIVDFPIDSFHDRIQpsnTHQYR---RKPSGCLIQDMPNGYSQVKWVEHI 465
                  ****************************************************9999877765522355555...5*********************** PP

                  E--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 171 dlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                  + +  ++  h+ +   v++g+a+ga++w+a lqrqce+
  AA290G00005 466 EIDQEHVhvHETFADYVNTGMAFGAQRWLAVLQRQCER 503
                  *****9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-1747119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-1951124IPR009057Homeodomain-like
PROSITE profilePS5007115.54854118IPR001356Homeobox domain
SMARTSM003893.6E-1555122IPR001356Homeobox domain
PfamPF000464.7E-1557116IPR001356Homeobox domain
CDDcd000863.04E-1757119No hitNo description
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084842.368264506IPR002913START domain
SuperFamilySSF559611.07E-28266505No hitNo description
CDDcd088752.94E-103268502No hitNo description
SMARTSM002349.0E-26273503IPR002913START domain
PfamPF018522.4E-37274503IPR002913START domain
SuperFamilySSF559611.22E-10539750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MGGDEMMESG SGGGSFGSGS ELQATEDPRS GNELDVVSVI NELQEDQLQQ HQPPSKKKRY  60
HRHTSRQIHE MEAYVLPLFN ENPHPDDKQR MRLSQELGLK PRQVKFWFQN RRTQMKAQQD  120
RAENVMLRAE NENLKAENCH LMEELRCLSC PSCGGPTVLG DIPFNELHIE NTRLREELDR  180
ISCITSRYTG RPMQSLTQSQ PLLNPPQAIQ QQHQPSLELD MSIYAGNFQE HSSTTDHMMM  240
LPPQDTTTSC FFPETNPNNN MLLAEEEKVI AMELAVSCVE ELTKMCNVDE PLWNLKRCDK  300
TGDETLCLNE EEYKKLFPWL MEANKGGFRR EVSRANAVVI MNSITLVDAF LNADKWSEMF  360
CSIVARAKTV QIISSGVSGA SGSLLLMYGE LQVLSPLVPT REAYFLRYVE QNIEQGTWAI  420
VDFPIDSFHD RIQPSNTHQY RRKPSGCLIQ DMPNGYSQVK WVEHIEIDQE HVHVHETFAD  480
YVNTGMAFGA QRWLAVLQRQ CERMASLLAR NITDLGVIPS AEARRNLMRL SQRMMRTFCV  540
NMSTSCGQSW TALSETSTET VRITTRKMCE SGQPTGVVLC AVSTTWFPFH HQKVFDLLRD  600
QHHNSLLEVL FNGNSPHEIA HIANGSHPGN CISLLRINIS SNSWHNVELM LQESCVDNSG  660
GLVVYSSVDV ESVQLAMNGQ DPSSIPLLPL GFSVVPVNPP EGVEGVSVNS GSCLLTVGIQ  720
VLTSSDPTAK PNLSTVTTIN NHLCSTVNQI TAALNSTIPS AVASSVTGDS SPVSKQEVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA290G00005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871346.10.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLR0GUB60.0R0GUB6_9BRAS; Uncharacterized protein
STRINGBostr.28243s0044.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]