PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00028
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 501aa    MW: 53624.3 Da    PI: 8.0949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00028genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.2e-125075227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG C yG+rC+F+H++
  AA29G00028 50 DEPDCIYYLRTGVCGYGPRCRFNHPR 75
                6899********************96 PP
2zf-CCCH37.93.1e-1298121427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C++f+rtGtCk+G++Ck++H++
  AA29G00028  98 PVCQHFMRTGTCKFGASCKYNHPR 121
                 68********************96 PP
3zf-CCCH38.22.4e-12170194226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++rtG+Ck+G +C+F+H+
  AA29G00028 170 GEKECSYYMRTGQCKFGLTCRFHHP 194
                 6789********************9 PP
4zf-CCCH391.3e-12332357126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C++f+rtG Ck+G++C+++H+
  AA29G00028 332 PGQPDCQYFMRTGDCKFGSSCRYHHP 357
                 5789*********************9 PP
5zf-CCCH33.76e-11380404327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++C++fa+ G+Ck+G+ CkF H++
  AA29G00028 380 AAPCSHFAQHGICKFGPACKFDHSM 404
                 589********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.4E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3334876IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55476IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-694121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9194122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-697122IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1098121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-599121IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5168195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77168196IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10170194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6171196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4174193IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.22331359IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10333357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4337356IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6377404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051377405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6380407IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8380403IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4382404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MERYGRTSEE RSRSDPSIEW TAPGGETGLE ASMWRLGLRG GGESYPERPD EPDCIYYLRT  60
GVCGYGPRCR FNHPRERGAV LGGVRGEAGE LPERMGAPVC QHFMRTGTCK FGASCKYNHP  120
RQGSGSATPV SLSYLGFPLR PVCTSLTNLI INHIVYCMIS QKLLKSDLQG EKECSYYMRT  180
GQCKFGLTCR FHHPVPQGPS QHQQQQQQQQ QQQMAASQVS AMAPPAIYPT IQSQSVPSSQ  240
QYGLVLARPP LLPGSYVQSP YPMVLPPGMV PYPGWNPYQA SVSAMPSPGT QPSSIYGLAP  300
LSPSAYTGTY QSGPSFVSPS NTPKEQSFPQ RPGQPDCQYF MRTGDCKFGS SCRYHHPLDA  360
VAPKSGVLLS PIGLPLRPGA APCSHFAQHG ICKFGPACKF DHSMGSLSYS PSASSLTDMP  420
VAPYPVGSSS LGTLAPSSSS SSDLQRPELV SSSSKESISL NTTEAVLPSA VSSSGLSYPE  480
TAEMSGDSAS VSGSVEAKTS S
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558473.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_010558473.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]