PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00047
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 235aa    MW: 25667.5 Da    PI: 12.0261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00047genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000281792032655
                 TSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  26 llPkaskapskKlsKaeiLekAveYIksLq 55 
                 l+P +     +K s   iLe+A++YI+ L+
  AA29G00047 179 LVPGC-----GKQSVPVILEEATDYIQALE 203
                 55555.....999**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.947153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-7169220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-6171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASLVSDSEP PMNLNLISTD LVRKKKRFSD SSATSSRRSA TSISTGEGES HARWRSEKQQ  60
RIYSAKLIQA LQKVRLNSSA AISSPTAHRN GKAVREAADR ALAVAARGRT LWSRAILTNR  120
IKLKFRKQKR PKSTPIPAVT SVISIGNNTR SRKSRVSMVK LNKKSLPSVH RKVRVLGRLV  180
PGCGKQSVPV ILEEATDYIQ ALEMQVRAMN SLVELLSTHS SSASTSESTS APPPS
Functional Description ? help Back to Top
Source Description
UniProtbHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00047
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407929.11e-103transcription factor bHLH148
SwissprotQ9C8Z91e-84BH148_ARATH; Transcription factor bHLH148
TrEMBLV4M3B61e-102V4M3B6_EUTSA; Uncharacterized protein
STRINGXP_006407929.11e-103(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61571318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.28e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sukweenadhi J, et al.
    Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress.
    Microbiol. Res., 2015. 172: p. 7-15
    [PMID:25721473]