PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA29G00117

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 444aa MW: 48859.6 Da PI: 7.2212

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA29G00117	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	265	312	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AA29G00117 265 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 312 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.43E-8	259	316	No hit	No description
SuperFamily	SSF47459	8.64E-17	259	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	261	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.37	261	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-6	265	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MENELFMNSG EMNSSSAMLN WASMEIQPIE SNLSLNPSRD CFFWEKSTEQ SIFDSALSSL 60 VSSPTPSNSN FSGGGGGSGE KFVIRELIGK LGNIGNCSNE IYGSNGNGNG NGYVRSSVTK 120 TAPLTEFSGD PGFAERAAKF SCFGSRSFNG RTNTAIPGPV VNIPTNGKLT RVSSSPALKN 180 QGDVSVSSVS VTASKPLIPA GEVSRKRKGK SKENSPNLSK EIEEKDESDR KKTKVSDENG 240 EKSKAPEPYK DFIHVRARRG QATDSHSLAE RVRREKIGER MKLLQDLVPG CNKVTGKALM 300 LDEIINYVQS LQRQVEFLSM KLSSVNTRLD YNMDTLVSKD ILTLSNNPLH QQILQLESSA 360 ETLLGAHNNM NLQINPNISS NNIMVQCQMD PLESSQLPTL THYTDSIPQY STFSENDLHS 420 IIQMGYTQNQ SDQVQDRRIK YHHT

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MENELFMNSG EMNSSSAMLN WASMEIQPIE SNLSLNPSRD CFFWEKSTEQ SIFDSALSSL  60
VSSPTPSNSN FSGGGGGSGE KFVIRELIGK LGNIGNCSNE IYGSNGNGNG NGYVRSSVTK  120
TAPLTEFSGD PGFAERAAKF SCFGSRSFNG RTNTAIPGPV VNIPTNGKLT RVSSSPALKN  180
QGDVSVSSVS VTASKPLIPA GEVSRKRKGK SKENSPNLSK EIEEKDESDR KKTKVSDENG  240
EKSKAPEPYK DFIHVRARRG QATDSHSLAE RVRREKIGER MKLLQDLVPG CNKVTGKALM  300
LDEIINYVQS LQRQVEFLSM KLSSVNTRLD YNMDTLVSKD ILTLSNNPLH QQILQLESSA  360
ETLLGAHNNM NLQINPNISS NNIMVQCQMD PLESSQLPTL THYTDSIPQY STFSENDLHS  420
IIQMGYTQNQ SDQVQDRRIK YHHT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA29G00117

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187390.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	D7L6J4	0.0	D7L6J4_ARALL; Predicted protein
STRING	Bostr.22252s0299.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-170	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]