PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00244
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 344aa    MW: 38206.2 Da    PI: 4.5874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00244genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-1883133155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+WvAeIr+p+    r +r +lg++ + +eAa a+++a+k+++g
  AA29G00244  83 CNYRGVRQRT-WGKWVAEIREPK----RgTRLWLGTYPSSYEAALAYDEAAKAMYG 133
                 56*****999.**********83....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-1483133IPR001471AP2/ERF domain
CDDcd000187.45E-3183142No hitNo description
SuperFamilySSF541711.37E-1884140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2884142IPR001471AP2/ERF domain
PROSITE profilePS5103221.07484141IPR001471AP2/ERF domain
SMARTSM003804.4E-3584147IPR001471AP2/ERF domain
PRINTSPR003671.3E-88596IPR001471AP2/ERF domain
PRINTSPR003671.3E-8107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGVLDQVANL ASIIPFDSSR KRKSRGRRNG ISVAETLRKW KEYNELTEAS CSDGSPTPIR  60
KAPAKGSKKG CMKGKGGPEN GICNYRGVRQ RTWGKWVAEI REPKRGTRLW LGTYPSSYEA  120
ALAYDEAAKA MYGQSARLNQ PHIEDSSCPT AATASGSDTT SEVCRVEDTK MRSNSQVKLE  180
DGSDEYIPLP VPLNSFSDVK EEKGEVKELS SAMASGYELD PKKEMLDGGV VGNGHDQEPW  240
SFDVEEMFDV DELLGSLEEN DVSIGQEKTL QVQDNIGEGD RNMNFNYQMQ FPDANLLGST  300
HLGDDFGYPF VQPSEEQNNG ICFDHRRFQD LDIQDLDFGN THFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1684141260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00244
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294524.11e-136dehydration-responsive element-binding protein 2C isoform X1
SwissprotQ8LFR21e-118DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLR0FWR91e-135R0FWR9_9BRAS; Uncharacterized protein
STRINGXP_006294524.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-86ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]