PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00263
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 586aa    MW: 64899.2 Da    PI: 7.8289
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00263genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-08265285526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd+C +aHg
  AA29G00263 265 PCPEFRK-GSCPKGDSCEYAHG 285
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1620159IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-1732191IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.65579188IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01579109IPR002110Ankyrin repeat
CDDcd002041.77E-1381191No hitNo description
PfamPF136373.6E-781132No hitNo description
SMARTSM002488.4114146IPR002110Ankyrin repeat
SMARTSM003566.3E-5260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976260287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5265286IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5265285IPR000571Zinc finger, CCCH-type
SMARTSM0035659295318IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.352295319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MCGTKSNLCS SKSLTDSNSI TQKQEQEAMQ SKTTSSLLEF AACNDLSSFK KELEEKDLDV  60
DEPSLWYCRK IGSKKMGIES RTPLMVAAMY GSTEVLNFII SMTKSDINKV CSDENVTALH  120
CAVAGCSISI VEIIKNLLNA SANPNCVDVN GNKPLDLFVK ASRFVSNSSR KAVEQLLKGN  180
LMADLEKEDE DLKNVSSPGT KYPADASLPD INEGIYGTDE FRMFSFKVKP CSRAYSHDWT  240
ECPFVHPGEN ARRRDPRKFP YTCVPCPEFR KGSCPKGDSC EYAHGVFESW LHPAQYRTRL  300
CKDETGCARR VCFFAHKRDE LRPVNASTGS AMVSPRSSQS PEMPVMSPLA LNSSSLPFSP  360
TFSSPLNSPM ANCVPSSPRN NGTWQNRVTP PLLQLNSSRL KSSLSARDME MEVRFRNLDT  420
QMSFGAAAAN SNLEESFGAA YDSRNVYTSS PHGFESSSAM AAAVMNARSS AFAKRSLSFK  480
PAPVASSNLA DWGSPNGKLE WGMQREELNK LRRSSSFGIH GNSVVRPARD YGEEPDVSWV  540
NSLVKEERSF GMEERVRDVG VKEKLKVKSS WAEQMYIEHE KQQIVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00263
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0852791e-139AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankAY0930161e-139AY093016.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g40140) mRNA, complete cds.
GenBankAY1289371e-139AY128937.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g40140) mRNA, complete cds.
GenBankCP0026851e-139CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101233.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLE4MY430.0E4MY43_EUTHA; mRNA, clone: RTFL01-26-C17
TrEMBLV4LQ670.0V4LQ67_EUTSA; Uncharacterized protein
STRINGBostr.23794s0043.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein