PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00045
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 130aa    MW: 15041 Da    PI: 10.5314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00045genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-1786127146
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                sgy+GVr+++ +g++ AeIrdp +   +kr++lg+f+t e+A++a+
  AA2G00045  86 SGYRGVRRRP-WGKYSAEIRDPFD---KKRIWLGTFDTIEGAKEAY 127
                89********.**********644...5*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381239.4E-282130IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000185.64E-2086129No hitNo description
PfamPF008471.6E-1086127IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1686129IPR016177DNA-binding domain
PROSITE profilePS5103218.12387130IPR001471AP2/ERF domain
SMARTSM003803.2E-887130IPR001471AP2/ERF domain
PRINTSPR003672.2E-98899IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1988129IPR001471AP2/ERF domain
PRINTSPR003672.2E-9110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MQNVVKGDKH KTRIDLSKIK RIRVTCTDPY ATEPSSDDES NSPAKNRRSL IAEINVEKLL  60
EKSEKKESNR EITVKLDVNK SRKSASGYRG VRRRPWGKYS AEIRDPFDKK RIWLGTFDTI  120
EGAKEAYNRN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551151.17e-26PREDICTED: ethylene-responsive transcription factor ERF117
SwissprotQ9M9B22e-17EF117_ARATH; Ethylene-responsive transcription factor ERF117
STRINGBostr.26675s0265.1.p4e-27(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.14e-19ERF family protein