PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA2G00046

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

CO-like

Protein Properties

Length: 337aa MW: 39178.1 Da PI: 8.2578

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA2G00046	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.2	8e-09	12	55	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k++ l+C +++ +lC++C ++ H+ H++v AA2G00046 12 QRACELCLQKQAVLYCASDDAFLCQSCDVSVHSAnqvaikHERV 55 688*****************************667888888776 PP
2	CCT	67	5.1e-23	288	330	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++ RY++KrktR+F+KkirYe+RK++A++RpR+KGrFv++ AA2G00046 288 REARVWRYRDKRKTRLFQKKIRYEVRKVNADKRPRMKGRFVRR 330 9****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.3E-8	10	57	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.537	10	57	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.4E-8	11	55	IPR000315	B-box-type zinc finger
CDD	cd00021	2.91E-9	13	57	No hit	No description
PROSITE profile	PS51017	15.835	288	330	IPR010402	CCT domain
Pfam	PF06203	1.3E-17	288	330	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MIFERQVDVK PQRACELCLQ KQAVLYCASD DAFLCQSCDV SVHSANQVAI KHERVCLKTN 60 ETPNNVPTSR PVWHSGFRRK ARTRRIRCGK KPQYNLHERR EDPRVPEIGG TGMFYISEKN 120 NDDDLTSLVP EFQGFFMTQD AIDDSLKLHT HFSGDINSSL EFQEELERKT LRADTEEVMK 180 QLNFEDEIEA MEDVYSNEDA KINGNKSCPE QSLITCRKGH DKFGAITDEN GESEANVRQR 240 NMLLRLNYED VIAAWDKQGS PSNFQLVPPG MDFGGGAEEK RLSNRSEREA RVWRYRDKRK 300 TRLFQKKIRY EVRKVNADKR PRMKGRFVRR TLPNDCF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	91	RRKARTRRIRCGKKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA2G00046

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870385.1	1e-128	zinc finger protein CONSTANS-LIKE 8 isoform X2
Swissprot	Q9M9B3	1e-117	COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBL	D7KE07	1e-126	D7KE07_ARALL; Uncharacterized protein
STRING	Bostr.26675s0264.1.p	1e-128	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15048	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49130.1	1e-120	B-box type zinc finger protein with CCT domain