PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00081
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 201aa    MW: 23294.4 Da    PI: 3.8926
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00081genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-1325114299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                fkv    ++ ++++l++p kf+ ++g   +   t+tle++ g +  +k+  ++ +++++l++GW+eF++++ + eg  ++Fk+ g+s+f  +v +f+k
  AA2G00081  25 FKVI-LLSTIQRKMLRIPAKFV-RFGP--KLMNTVTLETPLGFKRLIKV--KRIGEEIWLENGWSEFAESHCISEGYLLLFKYLGNSSF--RVVIFNK 114
                5554.356677788********.6763..36679***************..*************************************9..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-1918115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-1919115IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-1422113No hitNo description
PROSITE profilePS5086310.88423115IPR003340B3 DNA binding domain
SMARTSM010193.2E-1624115IPR003340B3 DNA binding domain
PfamPF023621.5E-1125114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVKTRKAKAP PQRRLNQEQE VKQFFKVILL STIQRKMLRI PAKFVRFGPK LMNTVTLETP  60
LGFKRLIKVK RIGEEIWLEN GWSEFAESHC ISEGYLLLFK YLGNSSFRVV IFNKSASEIQ  120
YKLDEINITD DDDDDYDDDD DHDDVDDDVF DVDGDDDDDD DDDDDDDDDG DGDDDVVDVD  180
DEEGFVESKS CNEFREVIEL D
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602987.13e-52PREDICTED: B3 domain-containing protein At1g49475 isoform X1
RefseqXP_013720044.13e-52B3 domain-containing protein At1g49475-like isoform X1
SwissprotQ9XIB42e-50Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A0D3DJK87e-51A0A0D3DJK8_BRAOL; Uncharacterized protein
STRINGBo8g011590.11e-51(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]