PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00194
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 227aa    MW: 25450.8 Da    PI: 5.4674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00194genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-1073120454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++  rE++RRd++N++f eL  +l +    + +K +K++iL  A++ +++L
  AA2G00194  73 SKACREKQRRDKLNDKFTELSLILDPG---RPPKTDKSAILCDAIRMVNQL 120
                5678****************9999887...89***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.48769120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-972125No hitNo description
Gene3DG3DSA:4.10.280.107.2E-1273142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-873120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1273138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLIDGAF SDQNPTFPWQ IDPIDGPTSV SVEVDGFLCD SDVIKEPGSR  60
KRLKSESCGG SSSKACREKQ RRDKLNDKFT ELSLILDPGR PPKTDKSAIL CDAIRMVNQL  120
RSEAQKIKDL NSNLQETIKE LKDEKNELRD EKQKLKIDKE RAEQQLKAVN LQTQSCFLPN  180
PSTISQSQAP GSKLVPFTTY PGFAMWQFMP PASVDTSQDH VLRPPVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393084.11e-141transcription factor bHLH115
SwissprotQ9C6821e-137BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A1J3FLU71e-143A0A1J3FLU7_NOCCA; Uncharacterized protein
STRINGXP_006393084.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-140bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]