PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00217
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 300aa    MW: 32651.4 Da    PI: 7.102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00217genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.1e-16222257134
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg
  AA2G00217 222 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKG 257
                *****99999***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.5E-1176111IPR010399Tify domain
PROSITE profilePS5132014.46776111IPR010399Tify domain
PfamPF062001.8E-1178110IPR010399Tify domain
PROSITE profilePS5101712.987146188IPR010402CCT domain
PfamPF062032.1E-15146188IPR010402CCT domain
SMARTSM004011.0E-11216269IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.629216277IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-12218279No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14220263IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.41E-13221270No hitNo description
PfamPF003202.7E-14222257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDDLHGSNAR MHIGEAQDQM VQYDHHSLHH IHGGNGMVDE HADGSNAGGM SDGVETDIPS  60
HPGNIADSRG EVVNRGNEQG DQLTLSFQGQ VYVFDSVMPE KVQAVLLLLG GRELPQTLPT  120
ALGSPHQSNR ELGLSGTPQR FSLPQRLASL VRFREKRKGR NFDKKIRYTV RKEVALRMQR  180
NKGQFTSAKS NNDEAGSAGS SWGSSQNWAI EGTEAQTQET TCRHCGISEK STPMMRRGPE  240
GPRTLCNACG LMWANKGALK DLSKCAPQIP QNLPANKNEE ANLEADQMMI AAAGNISNSP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00217
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305455.10.0GATA transcription factor 28 isoform X1
RefseqXP_023644658.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP10.0R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_006305455.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-179ZIM-LIKE 2