PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00083

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 303aa MW: 35710.4 Da PI: 10.4274

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00083	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86	3.4e-27	174	223	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++sledlskyF lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl AA30G00083 174 ARLSLEDLSKYFGLPIVEASRSLNVGLTVLKRKCREFGIPRWPHRKIKSL 223 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.452	158	243	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-22	176	223	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAHSLTFLAV FQSIFRKEMI RSLHVYGSME KEVVVEREFR FEWRSVYVEM KTEPLFPAGG 60 FRWPEISQGS IFDTWRCIFV FNSKSKSRRF PSLLCLSRNP KLQDIPNLAN DLKFISEVKH 120 KKLDQKQYNR VQDDNKIILK QDLNCLPDSD TDHSESDGKI EMMKKKRAAS KQIARLSLED 180 LSKYFGLPIV EASRSLNVGL TVLKRKCREF GIPRWPHRKI KSLDSLINDL QGEAERQRET 240 NEEVAMAVAK KQKIIEIERS VIEKKPFMEI KLETKRFRQD IFKKRHRASR AKQNNQESIK 300 IEF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00083

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869079.2	1e-132	LOW QUALITY PROTEIN: protein RKD5
Swissprot	O81791	1e-129	RKD5_ARATH; Protein RKD5
TrEMBL	D7MCF1	1e-132	D7MCF1_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.7__520__AT4G35590.1	1e-132	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-126	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]