PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00129

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 266aa MW: 30136.5 Da PI: 4.8335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00129	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.2	3e-08	42	84	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ RRdr++++f eL l ++ +K +Ka+iL+ +++ +k+L AA30G00129 42 REKLRRDRLKEKFLELGNALDSN----RTKSDKASILTDTIQMLKDL 84 9******************98....7**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.131	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-14	37	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-8	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-6	42	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-11	42	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.91E-6	42	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MDQSKKQKTS TELDFAYDSS ASSSSSSSNL RNDQVSSGKV YREKLRRDRL KEKFLELGNA 60 LDSNRTKSDK ASILTDTIQM LKDLMAQVDE LKAEYSMLSQ ESRELMREKS ELREEKASLR 120 SDIEILNDQY QQKVKTMVPW FPPQYSYPIA ITQSLISMQP QLPPLQFYTS QDPKPTSTFI 180 PYLTSVNSLT EQDSKSNSNL SDQDNDQKNV ALELNLKLTA FSAQQDISEK EKEKSSTNSG 240 NSYCSYSPSQ AVQDSSSEIV NNILKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00129

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195330.2	3e-75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	NP_849566.1	5e-75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q8W2F2	4e-76	BH011_ARATH; Transcription factor bHLH11
TrEMBL	A0A178UZE4	3e-74	A0A178UZE4_ARATH; BHLH11
STRING	AT4G36060.1	2e-74	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.2	1e-61	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]