PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00167

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 113aa MW: 13017 Da PI: 10.702

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00167	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72	4.9e-23	14	62	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie +sn qvtfskR++g++KKA+EL++LC++++++i+fs++gk + + AA30G00167 14 KKIEKESNLQVTFSKRKAGVFKKASELCTLCGVKILMIVFSPSGKAFSF 62 68******************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-31	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.866	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.84E-26	7	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-19	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-24	15	62	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.40E-21	20	65	No hit	No description
PRINTS	PR00404	1.2E-19	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-19	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MVRKNRGRQK IEIKKIEKES NLQVTFSKRK AGVFKKASEL CTLCGVKILM IVFSPSGKAF 60 SFGNPNVYDF INWIKFRNGN DSFYPSNNNQ QFAQMGQDPH IQSLNDQLTQ ILR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00167

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421667.1	6e-39	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	6e-33	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A178UZM5	5e-34	A0A178UZM5_ARATH; Uncharacterized protein
TrEMBL	A0MFC4	6e-34	A0MFC4_ARATH; Uncharacterized protein (Fragment)
TrEMBL	O23222	5e-34	O23222_ARATH; MADS-box protein
STRING	XP_010421667.1	2e-38	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	4e-32	M-type_MADS family protein

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]