PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00184
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25135.1 Da    PI: 5.2412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00184genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-2055107557
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 +++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  AA30G00184  55 RKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 107
                 5899***********************************************95 PP
2HD-ZIP_I/II121.63.8e-3953142291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kr+ls+eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d++  +++rLe+ev +L+e+l
   AA30G00184  53 RKRKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYTKLKNSHDNVLLQKCRLESEVVQLKEQL 142
                  8**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.1E-1951112IPR001356Homeobox domain
CDDcd000862.20E-1553109No hitNo description
PROSITE profilePS5007116.50353108IPR001356Homeobox domain
SuperFamilySSF466897.94E-1854116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2055115IPR009057Homeodomain-like
PfamPF000463.9E-1755107IPR001356Homeobox domain
PRINTSPR000316.0E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000316.0E-688104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTLISQLYSD VYTHNIIPQQ GEVKAPRRRR KKSKGTTVVT GGGGDGSNNC LFRKRKLSDE  60
QVNMLEMSFG DEHKLESERK DKLAAELGLD PRQVAVWFQN RRARWKNKRL EEEYTKLKNS  120
HDNVLLQKCR LESEVVQLKE QLFDAEREIQ RLAERVEAEG GSSNSPISSS VSVELNETMP  180
FFGDYGVRDD DGDVYDNLFY PPTENVYIDG TEWMSLYM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00184
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446748.11e-110PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-106ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A398ANQ71e-108A0A398ANQ7_BRACM; Uncharacterized protein
STRINGXP_010446748.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-88homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]