PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00207

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 180aa MW: 20406.1 Da PI: 5.0157

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00207	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.3	4.9e-33	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC +l++kC+++Cv+ pyfp++q++kf+ + ++FG++++l ++++lp +++++a++sl y Aear+rdP +Gavg+++++qq+ e+l + +++++e AA30G00207 5 SCAACEHLNQKCNDQCVFKPYFPQTQQQKFELIYQVFGTKKLLDIITNLPSSQHKNAINSLHYLAEARIRDPLEGAVGILKHYQQNNEKLLKRVHAARE 103 6*****************************************************************************************999999887 PP DUF260 100 e 100 + AA30G00207 104 K 104 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.666	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-30	5	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDSLSCAACE HLNQKCNDQC VFKPYFPQTQ QQKFELIYQV FGTKKLLDII TNLPSSQHKN 60 AINSLHYLAE ARIRDPLEGA VGILKHYQQN NEKLLKRVHA AREKLAALVG IDNVPKFPDL 120 QTPMNNDFPD ISMCLPFHVD EDIDFSQTLI NQEEIVEDLE VKLTNLTVDN HDASSSSAQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-23	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-23	6	105	12	111	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00207

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35900.1	2e-31	LOB domain-containing protein 35