PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00250

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9296.98 Da PI: 10.5115

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00250	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.5	1.2e-25	10	57	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k++r++ fskR+ng+lKKA+ELSvLCd+ a+iifs++gkly y AA30G00250 10 AIEDKTQRNIAFSKRKNGLLKKAYELSVLCDVHLAIIIFSPSGKLYLY 57 59********************************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.67	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-28	2	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-24	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGRKKIEMRA IEDKTQRNIA FSKRKNGLLK KAYELSVLCD VHLAIIIFSP SGKLYLYDSK 60 SRIEDIVRMY LDTPRHIRGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-18	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411890.2	2e-32	truncated transcription factor CAULIFLOWER D
Swissprot	Q9LM46	2e-25	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	V4MKU5	7e-32	V4MKU5_EUTSA; Uncharacterized protein
STRING	XP_006411890.1	1e-32	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	9e-28	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]