PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA30G00292

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 624aa MW: 71325.2 Da PI: 8.4361

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA30G00292	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.9e-10	182	229	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L +P + kK++Ka++L A +++k+Lq AA30G00292 182 QEHIIAERKRREKLTQRFVALSAQVPGL-----KKMDKASVLGGALKHLKYLQ 229 5799**********************.....9****************9 PP
2	HLH	37.6	4.1e-12	444	491	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L llP + kK++Ka++L Av++Ik+Lq AA30G00292 444 QEHIIAERKRREKLTQRFVALSALLPGL-----KKMDKASVLGDAVKHIKNLQ 491 5799**********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.303	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-8	182	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-14	183	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	183	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.50E-9	184	233	No hit	No description
SMART	SM00353	2.7E-12	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.377	441	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-10	444	491	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	445	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-16	445	511	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-10	446	491	No hit	No description
SMART	SM00353	6.5E-14	447	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MESMVLVKRS KLILEDNNNN QESYSSSSSS VEDDFFGLNL PEIEVRFADK DVLIKILCEK 60 QKGHVVKIMN EIEKLHFSIT NSNVLPFGST LDITIVAQKE SDFSMTLMDV VKSLRILSFE 120 NIGQNVMEHQ DYSPHFLNSI LTPKQDSKLN LNRLNTESIP KAFNGKGIKK PQPLARTQSN 180 AQEHIIAERK RREKLTQRFV ALSAQVPGLK KMDKASVLGG ALKHLKYLQE SVREFEEQKK 240 ERTLESMVLV KISKLIWDKN NEIEDSDINF PEIEVRFSDK DVLIKILCEK QKGYIAKIVA 300 EIEKLNFLIT NTTTLPFGPT LDITIIAKMN TKVEEVNEVQ YTLPHNGYNI DSSFGDFMEQ 360 KPLKILKNLP SSSSLLPTLK PQNHHQSSSR ILSFENVGPN VINQDIEYSP THLNSMFITT 420 KDDPMNAKGT KRAQSLTRSH SNAQEHIIAE RKRREKLTQR FVALSALLPG LKKMDKASVL 480 GDAVKHIKNL QERVKEFEEE KKEKRLESMV LVKRSKLILE DNNSLLSSID DNHNFLRLNL 540 PEIEVRFVEK DVQIKILCEK QKGHVGKIMN EIEKLGFLFT NSSVLQFGPT LDITIIAQKE 600 DNFDMKLIDV MKSLSWLYQT SCDC

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MESMVLVKRS KLILEDNNNN QESYSSSSSS VEDDFFGLNL PEIEVRFADK DVLIKILCEK  60
QKGHVVKIMN EIEKLHFSIT NSNVLPFGST LDITIVAQKE SDFSMTLMDV VKSLRILSFE  120
NIGQNVMEHQ DYSPHFLNSI LTPKQDSKLN LNRLNTESIP KAFNGKGIKK PQPLARTQSN  180
AQEHIIAERK RREKLTQRFV ALSAQVPGLK KMDKASVLGG ALKHLKYLQE SVREFEEQKK  240
ERTLESMVLV KISKLIWDKN NEIEDSDINF PEIEVRFSDK DVLIKILCEK QKGYIAKIVA  300
EIEKLNFLIT NTTTLPFGPT LDITIIAKMN TKVEEVNEVQ YTLPHNGYNI DSSFGDFMEQ  360
KPLKILKNLP SSSSLLPTLK PQNHHQSSSR ILSFENVGPN VINQDIEYSP THLNSMFITT  420
KDDPMNAKGT KRAQSLTRSH SNAQEHIIAE RKRREKLTQR FVALSALLPG LKKMDKASVL  480
GDAVKHIKNL QERVKEFEEE KKEKRLESMV LVKRSKLILE DNNSLLSSID DNHNFLRLNL  540
PEIEVRFVEK DVQIKILCEK QKGHVGKIMN EIEKLGFLFT NSSVLQFGPT LDITIIAQKE  600
DNFDMKLIDV MKSLSWLYQT SCDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	449	454	ERKRRE
2	450	455	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA30G00292

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001329767.1	1e-113	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	NP_195498.3	1e-113	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9T072	1e-114	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A1J3CWY6	1e-115	A0A1J3CWY6_NOCCA; Transcription factor bHLH25
STRING	AT4G37850.1	1e-112	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-97	bHLH family protein