PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00317
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 211aa    MW: 23699.7 Da    PI: 10.7539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00317genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-1260106354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+ +ErrRR riN+ f++Lr++lP++      K +Ka +L ++v+Y ++L
  AA30G00317  60 KKHSDAERRRRLRINNQFATLRTILPNL-----IKQDKAYVLGETVRYFNEL 106
                 68*************************9.....69*************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-1348112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.28457106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1060106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-860111No hitNo description
Gene3DG3DSA:4.10.280.102.6E-1361111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-963112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVFLQHLEQG IRPISRCYDP TTYSTMRRNL YSATTSSKLF YRGSITKPKS KIESKEVAAK  60
KHSDAERRRR LRINNQFATL RTILPNLIKQ DKAYVLGETV RYFNELKKKV KDIPTTPALE  120
DSLRLGHCNK DIAKVVFNCS DREGLISELT EAIKSAKAKP VRAEFMTIGG RTKCALFLQG  180
VNGNEGLIKL KKTLKPVVNG KSSIAKNIIG G
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00317
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411819.11e-110transcription factor bHLH131
SwissprotP0CB251e-103BH131_ARATH; Transcription factor bHLH131
TrEMBLD7M9K51e-114D7M9K5_ARALL; Predicted protein
STRINGAl_scaffold_0007_2331e-114(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.14e-98bHLH family protein