PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00019
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ZF-HD
Protein Properties Length: 181aa    MW: 20068.7 Da    PI: 8.2176
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.9e-331569358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 +++YkeClkNhA+++GghavDGC+Efmps ge+gt ++lkCaACgCHRnFHR+e++
   AA31G00019 15 AIKYKECLKNHAVNIGGHAVDGCCEFMPS-GEDGTLDSLKCAACGCHRNFHRKETD 69
                 689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-251669IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.5E-311668IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-301767IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2431867IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-30110180IPR009057Homeodomain-like
SuperFamilySSF466893.47E-20110179IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-29123180IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEIQEHEEQT SSCGAIKYKE CLKNHAVNIG GHAVDGCCEF MPSGEDGTLD SLKCAACGCH  60
RNFHRKETDV GKARIPTYYT RTPQLPPPGN LYRPLALPAS GGDEEDTSNP SSSGGGGGDG  120
GRKKRFRTKF TAEQKEKMLG FAEKLGWRIQ KHDDLEVEQF CAETGVRRKV LKIWMHNNKK  180
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-321241791873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138327.12e-92PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB617e-85ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLM4DBG24e-91M4DBG2_BRARP; Uncharacterized protein
STRINGBra013822.1-P7e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-83homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]