PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA31G00060

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 230aa MW: 25704.2 Da PI: 6.509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA31G00060	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	46	102	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55 +++ hn+rEr RR r+ ++ +L +llP +s + +kK +i ++v YI +Lq AA31G00060 46 KKEDHNARERLRRMRLHASYLTLGTLLPDSSssSSFKKKWCAPSIIDRVVAYIPKLQ 102 6889***********************6658888899*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-11	43	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.966	45	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	46	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-5	46	106	No hit	No description
Pfam	PF00010	1.1E-5	46	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-5	51	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
EDPLSLIFNP DQEATSLTST STLLHRLHIP VETPLKEGQD GSNGAKKEDH NARERLRRMR 60 LHASYLTLGT LLPDSSSSSS FKKKWCAPSI IDRVVAYIPK LQTEVEELVL RKQQIVEAME 120 RRKSEELELS VTSPLRTISV HELGEASGEA IVQICTRKAK EDEFSNLLVV MEAQGLSILS 180 ASTAQVCRDQ QVVCYHFHVK MGENGCGDAH DHGHDDYITM LKKNIIKSLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA31G00060

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456305.1	3e-76	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108827412
Swissprot	F4I8F9	2e-72	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A1J3J7M1	9e-84	A0A1J3J7M1_NOCCA; Transcription factor ORG2
STRING	XP_006390794.1	1e-74	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-68	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]