PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00078
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 180aa    MW: 19977.4 Da    PI: 5.012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-182070155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  AA31G00078 20 SSYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 70
                67*****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-222079IPR016177DNA-binding domain
PfamPF008472.7E-112070IPR001471AP2/ERF domain
CDDcd000189.41E-332080No hitNo description
SMARTSM003803.2E-392184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-322179IPR001471AP2/ERF domain
PROSITE profilePS5103223.632178IPR001471AP2/ERF domain
PRINTSPR003677.9E-132233IPR001471AP2/ERF domain
PRINTSPR003677.9E-136080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MADQSGSSNV DNGGQAGIPS SYRGVRKRKW GKWVSEIREP GTKNRIWLGS FETPEMAATA  60
YDVAAFHFRG REARLNFPEL VSSLPRPVSS SPDNIRMAAH EAVVCLRTTA EPAMQEDNSS  120
SGTGPMMVRL SPREIQAIKE STLGSPTTWM QPTYDPMTFA SDMEMNLWDD IYQTGSIWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172283668ATERF1
3gcc_A1e-172283668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619969.12e-91PREDICTED: ethylene-responsive transcription factor ERF021-like
RefseqXP_013710766.12e-91ethylene-responsive transcription factor ERF021
SwissprotQ9C9I26e-89ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D3APU96e-90A0A0D3APU9_BRAOL; Uncharacterized protein
TrEMBLA0A398ABM65e-90A0A398ABM6_BRACM; Uncharacterized protein
TrEMBLA0A3P6D9C06e-90A0A3P6D9C0_BRAOL; Uncharacterized protein
STRINGBo2g072910.11e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-81ERF family protein